Due to the low energy threshold of photodisruption with fs laser pulses, thermal and mechanical side effects are limited to the sub μm range. The neglection of side effects enables the use of ultrashort laser pulses in a broad field of medical applications. Moreover, the interaction process based on nonlinear absorption offers the opportunity to process transparent tissue three dimensionally inside the bulk. We demonstrate the feasibility of surgical procedures in different fields of medical interest: In ophthalmology intrastromal cutting and preparing of cornael flaps for refractive surgery in living animals is presented. Besides, the very low mechanical side effects enables the use of fs-laser in otoralyngology to treat ocecular bones. Moreover, the precise cutting quality can be used in fields of cardiovascular surgery for the treatment of arteriosklerosis as well as in dentistry to remove caries from dental hard tissue.